Download The Ecological Genomics of Fungi by Francis Martin PDF

By Francis Martin

This particular ebook covers a extensive range of fungal structures and offers targeted perception into the features of these fungi in a variety of ecosystems – from soil, to plant, to human. Bringing jointly fungal genomic info on numerous existence and features, the ebook covers saprotrophism, pathogenesis (including biotrophs, hemibiotrophs, necrotrophs) and symbiosis. Advances in high-throughput sequencing now supply unheard of possibilities for id of novel key molecular mechanisms controlling plant-microbe interactions, evolution of fungi and developmentally- and ecologically-relevant features,  this booklet explores how those significant streams of fungal sequences will be exploited to achieve a deeper realizing of the evolution of fungi and their ecological role.

 

Although super development has been made lately in fungal genomics, due to the sequencing of over 100 fungal genomes, in the past no e-book has used this data to bridge fungal genomics, molecular ecology and ecology. Edited by means of a famous chief in fungal genomics and soil metagenomics with over a decade of expertise, Genomics & Metagenomics for Harnessing the Ecology of Fungi may be an invaluable source for the skilled in addition to the hot researchers getting into the field.

Content:
Chapter 1 A altering panorama of Fungal Genomics (pages 1–20): Igor V. Grigoriev
Chapter 2 Repeated parts in Filamentous Fungi with a spotlight on Wood‐Decay Fungi (pages 21–40): Claude Murat, Thibaut Payen, Denis Petitpierre and Jessy Labbé
Chapter three wooden Decay (pages 41–62): Dan Cullen
Chapter four Aspergilli and Biomass‐Degrading Fungi (pages 63–87): Isabelle Benoit, Ronald P. de Vries, Scott E. Baker and Sue A. Karagiosis
Chapter five Ecological Genomics of Trichoderma (pages 89–116): Irina S. Druzhinina and Christian P. Kubicek
Chapter 6 Dothideomycetes (pages 117–147): Stephen B. Goodwin
Chapter 7 Biotrophic Fungi (Powdery Mildews, Rusts, and Smuts) (pages 149–168): Sébastien Duplessis, Pietro D. Spanu and Jan Schirawski
Chapter eight The Mycorrhizal Symbiosis Genomics (pages 169–189): Francis Martin and Annegret Kohler
Chapter nine Lichen Genomics (pages 191–212): Martin Grube, Gabriele Berg, Ólafur S. Andrésson, Oddur Vilhelmsson, Paul S. Dyer and Vivian P.W. Miao
Chapter 10 Ecogenomics of Human and Animal Basidiomycetous Yeast Pathogens (pages 213–242): Sheng sunlight, Ferry Hagen, Jun Xu, Tom Dawson, Joseph Heitman, James Kronstad, Charles Saunders and Teun Boekhout
Chapter eleven Genomics of Entomopathogenic Fungi (pages 243–260): Chengshu Wang and Raymond J. St. Leger
Chapter 12 Ecological Genomics of the Microsporidia (pages 261–278): Nicolas Corradi and Patrick J. Keeling
Chapter thirteen Metagenomics for examine of Fungal Ecology (pages 279–303): Björn D. Lindahl and Cheryl R. Kuske
Chapter 14 Metatranscriptomics of Soil Eukaryotic groups (pages 305–323): Laurence Fraissinet‐Tachet, Roland Marmeisse, Lucie Zinger and Patricia Luis
Chapter 15 Fungi in Deep‐Sea Environments and Metagenomics (pages 325–354): Stéphane Mahé, Vanessa Rédou, Thomas Le Calvez, Philippe Vandenkoornhuyse and Gaëtan Burgaud
Chapter sixteen The Biodiversity, Ecology, and Biogeography of Ascomycetous Yeasts (pages 355–370): Marc‐André Lachance

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Aestivum], Molinier, 2013). , 2012). 03 were used to extract reads with perfect microsatellites. 03 allowed the design of primers to characterize new polymorphic markers with these microsatellites. These authors highlighted the usefulness of Illumina reads and concluded that Illumina “Seq-to-SSR” is effective, inexpensive, and reliable even for species that have few microsatellites loci. Minisatellites and Satellites Often, because of the lack of a precise definition of minisatellites, these structures are usually not annotated in genomic sequence data.

Mackay TFC, Lyman RF, et al. 1992. Effects of P-element insertions on quantitative traits in Drosophila melanogaster. Genetics. 130: 315–332. REPEATED ELEMENTS IN FILAMENTOUS FUNGI 39 Magain N, Forrest LL, et al. 2010. Microsatellite primers in the Peltigera dolichorhiza complex (lichenized ascomycete, Peltigerales). Am J Bot. 97: e102–e104. Malausa T, Gilles A, et al. 2011. High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries. Mol Ecol Res.

Initial sequencing and analysis of the human genome. Nature. 409: 860–921. Lepais O & Bacles CFE. 2011. Comparison of random and SSR-enriched shotgun pyrosequencing for microsatellite discovery and single multiplex optimization in Acacia harpophylla F, Muell, Ex Bebth. Mol Ecol Res. 11: 711–724. Li Y-C, Korol AB, et al. 2004. Microsatellites within genes: Structure, function, and evolution. Mol Biol Evol. 21: 991–1007. Lohe AR, Mriyama EN, et al. 1995. Horizontal transmission, vertical inactivation and stochastic loss of mariner-like transposable elements.

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